Genomic coordinates (excluding Y chromosome) for m6a sites from 3 experiments:
Boulias et al. 2019,
Koh et al. 2019, and
Koertel et al. 2021.
Usage
data(m6a_miclip)Format
a GRanges object:
experiments: Character string. Possible values, all combinations of: Boulias, Koh, and Koertel
region ref: Character string. Coordinates, format: "chr:start-end:strand".
References
Koh CWQ, Goh YT, Goh WSS. Atlas of quantitative single-base-resolution n6-methyl-adenine methylomes. Nat Commun. 2019; 10:5636. https://doi.org/10.1038/s41467-019-13561-z.
Boulias K, Toczydłowska-Socha D, Hawley BR, Liberman N, Takashima K, Zaccara S, Guez T, Vasseur J-J, Debart F, Aravind L, Jaffrey SR, Greer EL. Identification of the m, javax.xml.bind.jaxbelement@3155288a, am methyltransferase pcif1 reveals the location and functions of m, javax.xml.bind.jaxbelement@72f29a24, am in the transcriptome. Mol Cell. 2019; 75:631–6438. https://doi.org/10.1016/j.molcel.2019.06.006.
Körtel N, Rücklé C, Zhou Y, Busch A, Hoch-Kraft P, Sutandy FXR, Haase J, Pradhan M, Musheev M, Ostareck D, Ostareck-Lederer A, Dieterich C, Hüttelmaier S, Niehrs C, Rausch O, Dominissini D, König J, Zarnack K. Deep and accurate detection of m6a RNA modifications using miclip2 and m6aboost machine learning. Nucleic Acids Res. 2021; 49:92. https://doi.org/10.1093/nar/gkab485.