All functions
            
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             addSeq  
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          Return sequences for the exon pairs  | 
        
          
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             bcl6exons  
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          Exon structure of BCL6 transcripts  | 
        
          
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             design  
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          Run primer design  | 
        
          
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             diagnose  
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          Returns diagnostics information from the run  | 
        
          
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             extractExonPairs  
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          Get exon pairs  | 
        
          
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             p3Settings  
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          Get/define Primer3 settings  | 
        
          
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             p3Version  
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          Get Primer3 version  | 
        
          
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             plotSegments  
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          Plot exon structure  | 
        
          
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             primerSize  
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          Set primer size  | 
        
          
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             primersToList  
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          Split primers GRanges into a list by their direction  | 
        
          
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             primerTm  
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          Set ptimer melting temperatures  | 
        
          
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             productSize  
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          Set product size  | 
        
          
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             runPrimer3  
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          Invokes Primer3 for a given list of options  | 
        
          
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             selectPairs  
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          Given a list of exons returns candidates for primer design  | 
        
          
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             seqSettings  
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          A helper to define template parameters  | 
        
          
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             toGRanges  
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          Transforms output of design to GRanges  |