All functions

addSeq

Return sequences for the exon pairs

bcl6exons

Exon structure of BCL6 transcripts

design

Run primer design

diagnose

Returns diagnostics information from the run

extractExonPairs

Get exon pairs

p3Settings

Get/define Primer3 settings

p3Version

Get Primer3 version

plotSegments

Plot exon structure

primerSize

Set primer size

primersToList

Split primers GRanges into a list by their direction

primerTm

Set ptimer melting temperatures

productSize

Set product size

runPrimer3

Invokes Primer3 for a given list of options

selectPairs

Given a list of exons returns candidates for primer design

seqSettings

A helper to define template parameters

toGRanges

Transforms output of design to GRanges