Release notes¶

Change log¶

All notable changes to scimodom will be documented in this file. The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[Unreleased] - 2025-05¶

Fixed

Liftover of thick coordinates #122
Add unique constraint to data records
OverflowError #180

Changed

Update to euf-specs v2 #167, #175
Database migration #167
Display of missing coverage and frequency for BED6

Added

Validation of thick coordinates for import (not in DTOs or ORM models)

Removed

Offending datasets (Nm-Mut-seq, m7G-seq)

[4.0.2] - 2025-04-30¶

Fixed

Form (date validation) #162
Database schema/migration and #166
CLI (project delete) #178
Vitest vulnerability

Changed

Documentation

Added

Favicon

Removed

RBP logos-related code

[4.0.1] - 2025-03-26¶

Fixed

#165

[4.0.0] - 2025-03-10¶

Fixed

Gene cache query missing filter for modification.

Changed

CLI
Documentation

Added

CLI tests

[3.1.1] - 2025-01-15¶

Fixed

ValidationError for IntersectResponse in /api/v0/modification/target/RBP? (Bed6Record DTO).
EUFID link in ModificationSiteTable.

Changed

dev and tests dependencies
node/npm version

[3.1.0] - 2025-01-08¶

Fixed

URL constructor
Gene cache management
EUF toggle in Comparison
SMID/EUFID length validation

Changed

API version management
utils
Error handling
Documentation

Added

bedRMod validation in Comparison (#92)
TypeScript

[3.0.0] 2024-09-25¶

Fixed

Missing query for chromosome end
Annotation: missing records (#141)
Annotation: feature, gene, and biotype association (#139)

Changed

Search API
Minor changes to the web interface (info button)
Link to matched Ensembl version (110)

Added

Search table full export (#151)
Search query modalities (gene search)
Link to Ensembl gene table (#140)
Chart data caching, CLI-related utilities, and update on import

[2.0.6] 2024-08-15¶

First release.