initParams assigns the first normalisation factor to 1 if the normalisation factors are used
update vignettes, add a vignette for the RNA modification to model m6A
pulseR 1.0.2
update documentation
the stopping criteria is based on the ABSOLUTE change of parameters, not relative. If the the parameter can have zero value, relative changes make no sense. It is advised to provide parameters on the same scale then, e.g. log(expression level) instead of working the mean read counts units.
pulseR 1.0.1
fixed order of formulae in PulseData object. Now they are sorted according to the factor levels in the condition data.frame