Set the stopping criteria in a form of the absolute changes during fitting iterations.

Set the stopping criteria in a form of the absolute changes during fitting iterations.

setTolerance(params = 0.01, shared = 0.01, normFactors = 0.01,
  logLik = 0.5, options = .defaultParams)

Arguments

params	a threshold for gene-specific parameter boundaries
shared	a threshold for shared parameters boundaries
normFactors	a threshold for the fraction factors
logLik	a threshold for the logarithm of the likelihood function
options	an options object to use as a basis for a new parameter set

Value

an options object with the new parameter values

Details

If no options object is provided, the default options are used as a base. A threshold represents the absolute changes in parameter values between two subsequent fitting iterations.

Examples

setTolerance(params = 1e-2)
#> $tolerance
#> $tolerance$params
#> [1] 0.01
#> 
#> $tolerance$shared
#> [1] 0.01
#> 
#> $tolerance$normFactors
#> [1] 0.01
#> 
#> $tolerance$logLik
#> [1] 0.5
#> 
#> 
#> $verbose
#> [1] "silent"
#> 
#> $lb
#> $lb$size
#> [1] 10
#> 
#> 
#> $ub
#> $ub$size
#> [1] 1e+07
#> 
#> 
#> $fixedNorms
#> [1] FALSE
#>